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sabeti-publichealthwriting

For code related to the Sabeti Lab's public health writing group

sabetilab-remote-config

configuration files for systems deployed at collaborating sites in West Africa (Ansible, route53, autossh)

sails-mongo

MongoDB adapter for Sails.js

sam

workbench identity and access management

sassy

A simple assay simulator

satmut_asm_parser

satmut_variantlibrary_designer

sc2-cmu-study

Analysis scripts and notes related to a study of SARS-CoV-2 transmission at Colorado Mesa University 2020-2021

sc2-rmd

sc2-seq-dash-public

SARS-CoV-2 sequencing dashboard code

sc2-variation-scripts

scripts related to analyzing variation in SARS-CoV-2

sc_analysis_portal

sc_topics

Interface for topic modeling on Single Cell Data

scala-baseimage

Base image for Scala programs and services

scalable_analytics

Public collaboration of Scalable Single Cell Analytics

scalacache

Simple caching in Scala

scaraplate

Scaraplate is a wrapper around cookiecutter which allows to repeatedly rollup project templates onto concrete projects.

scientific-python-2.7

scientific python 2.7 with intel MKL built into virtual machines. Docker, AMI, Virtualbox, Vmware, KVM and more

scion

A make-like tool to automatically paste pieces of file contents together into new files

scn2a_base_editing

scp-ingest-pipeline

File Ingest Pipeline for Single Cell Portal

scp-rails-baseimage

Docker image builder repository to build Phusion/Passenger & Single Cell Portal docker images using managed GCR Ubuntu base image

scred

Python implementation of REDCap API

scrna-seq

security_monkey

Security Monkey

segmentation

A playground to test things out for preliminary research

segmentation_experiments

BSRP summer internship project attempting to streamline nucleus segmentation

selene

BGZ/TBI Reader

sensu-chef

Sensu Chef cookbook.

sensu-community-plugins

Sensu community plugins & handlers, sharing is good.