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phenotype-driven-analysis

Pipelines and scripts related to phenotype-driven analysis of rare-disease cases.

phewas_genetic_analysis

phlock

used to publish a tool called "phlock" which is used for submitting R/python jobs to job queues and tracking the status

phylogicndt

picard

A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.

pilon

Pilon is an automated genome assembly improvement and variant detection tool

pipelines-tools

Tools for developing and running pipelines with the Genomics API

pipelinessupport

A repo to contain files that support Broad processing pipelines.

playwright-e2e

plink2-docker

A dockerfile for plink2 alpha releases

plinkdocker

plotly-dash-gcp

base docker image for running plotly/dash on GCR or GAE

podman

Puppet module for podman

policyscanner

polyphonia

Detects cross-contamination in sequence data.

pooled-cell-painting-image-processing

pooled-cell-painting-profiling-recipe

:woman_cook: Recipe repository for image-based profiling of Pooled Cell Painting experiments

pooled-cell-painting-profiling-template

:hammer_and_wrench: Use me to version control Pooled Cell Painting data and processing pipelines

poolq

The Genetic Perturbation Platform's tool for deconvoluting and quantifying the results of pooled screens

popscle

A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and auxilary tools

position-effect-correction

potato-site

powershell-docker

Repository for building PowerShell Docker images

prancer

Platform enabling Rapid Annotation for Clinical Entity Recognition

pre-commit-hooks

Some out-of-the-box hooks for pre-commit

preemptible_cromwell

test to make cromwell use preemptible VM with restart from ckpt

prism_data_processing

Data processing pipeline for PRISM MTS

profiling-recipe

Image-based Profiling Recipe

profiling-resistance-mechanisms

Predicting pharmacodynamic responses to cancer drugs using cell morphology

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